Wednesday, 22 April 2015

List of Publications

Jennifer Deegan was previously an academic research scientist, and now writes articles on gardening, science and computing topics for websites and magazines. Each article title below is hyperlinked to the original published article.



Blog: The Itinerant Botanist



Popular Press: Garden Writing


Asystasia Chinese Violet Control: Information On Chinese Violet Growing Conditions, Gardening Know How, March 2013.

An Artists' Colony, Gardeners' World Magazine, October 2012.

Just like Topsy, Amateur Gardening, 22/29 December 2012.

Be careful what you wish for, Gardeners' World Magazine, July 2013.

Untitled comment, Gardeners' World Magazine, August 2013.


Technical writing for websites


MailOrderTrees: Quality British Grown Trees:

Plant descriptions:
Blog posts:


Current affairs 


Apply the bleeper to SNP's speeches, Financial Times, April 12 2013.

UK's future could rest on a single vote, Financial Times, August 11 2014



Academic science - Plant Science 


Clark JI, Coen ES. The cycloidea gene can respond to a common dorsoventral prepattern in Antirrhinum. Plant J. 2002 Jun;30(6):639-48.

 Da Luo, Carpenter R, Copsey L, Vincent C, Clark JI, and Coen ES. Control of Organ Asymmetry in Flowers of Antirrhinum. Cell, Vol. 99, 367-376, November 12, 1999. 




Academic science - Bioinformatics 


First Author 


Deegan JI, Dimmer EC, Mungall CJ. Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development. BMC Bioinformatics. 2010; 11 : 530.

 Clark JI, Brooksbank C, Lomax J. It's all GO for plant scientists. Plant Physiol. 2005 Jul;138(3):1268-79.



Supervising Author 


Feltrin E, Campanaro S, Diehl AD, Ehler E, Faulkner G, Fordham J, Gardin C, Harris M, Hill D, Knoell R, Laveder P, Mittempergher L, Nori A, Reggiani C, Sorrentino V, Volpe P, Zara I, Valle G and Deegan née Clark J. Muscle Research and Gene Ontology: New standards for improved data integration. BMC Medical Genomics 2009, 2:6


Contributor 


Mungall CJ, Bada M, Berardini TZ, Deegan JI, Ireland A, Harris MA, Hill DP, Lomax J. Cross-Product Extensions of the Gene Ontology. J Biomed Inform. 2011 February ; 44(1): 80-86

Gene Ontology Consortium. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Research, 2004, Vol. 32, Database issue

 Wortman JR, Gilsenan JM, Joardar V, Deegan JI, et al. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet Biol. 2009 March; 46(Suppl 1): S2 : 13.

The Gene Ontology Consortium. The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Research, 2010, Vol. 38, Database issue.

Gene Ontology Consortium. The Gene Ontology (GO) project in 2006. D322-D326 Nucleic Acids Research, 2006, Vol. 34, Database issue Gene Ontology Consortium. "An Introduction to the Gene Ontology." (2004).

Day-Richter J, Harris MA, Haendel M, The Gene Ontology OBO-Edit Working Group, Lewis S. OBO-Edit - an ontology editor for biologists. Bioinformatics Applications Note. Vol. 23 no. 16 2007, pages 2198-2200

Harris MA, Deegan JI et al. The Gene Ontology project in 2008. D440-D444 Nucleic Acids Research, 2008, Vol. 36, Database issue.

Sacks, O., Barry, S.R., Fixing My Gaze: A Scientist's Journey into Seeing in Three Dimensions (2010), Basic Books; First Trade Paper Edition edition.

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